PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263349
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 286aa    MW: 32088 Da    PI: 8.1059
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263349genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.31.5e-28112172159
                    ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ k+++  pr+Y+rC++a +Cpvkkkv+rs ed++++ +tYegeHnh+
  MDP0000263349 112 VKDGYQWRKYGQKVTKDNPsSPRAYFRCSFApRCPVKKKVQRSMEDKSFLMVTYEGEHNHD 172
                    58**************997369********99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-28103173IPR003657WRKY domain
PROSITE profilePS5081123.227107174IPR003657WRKY domain
SuperFamilySSF1182901.57E-23109173IPR003657WRKY domain
SMARTSM007742.0E-32112173IPR003657WRKY domain
PfamPF031067.9E-24113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDARTPNKQK VVDSVQEDLQ RLRNENATLR FLLQAMTTRC STLEQKHHHH HHQMHIQQQP  60
CDHQHIMTTN INSAITSKRP RTEDHCDPFP ASHHKTSQFL VKTDSKDNSL IVKDGYQWRK  120
YGQKVTKDNP SSPRAYFRCS FAPRCPVKKK VQRSMEDKSF LMVTYEGEHN HDTINDSLLF  180
GQFSCSVAAA ADLKNIIMPI SVPSSSIGPD NDVINISPSP PEPVTLDLNL SGLTNQENGG  240
FGSPQSMNCD RRVEDYVASL TKDPNFTQAL AAAVARSITG PADRPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191111721372WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378972.10.0PREDICTED: WRKY transcription factor 18-like
TrEMBLM5XF381e-93M5XF38_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-39WRKY DNA-binding protein 40